Inventory management is the heart and soul of an ecommerce business. Global ecommerce sales are estimated to reach $7 trillion in 2025. Picking the best ecommerce inventory management software can ultimately determine your business’s success or failure. No matter the size of your Shopify store or the volume of your items, the best ecommerce inventory software solutions guarantee all-time stock management, integrated multichannel synch and efficient workflows.
This guide covers the best 15 inventory management software for an ecommerce business comparing key details on features and pricing so you can choose the best inventory management system for ecommerce that suits your business.
What is Ecommerce Inventory Management Software?
Ecommerce inventory management software is a dedicated solution created to monitor, oversee, and maximize inventory levels for ecommerce stores, marketplaces, and warehouses. It also automates mission-critical tasks, such as updating stock, fulfilling orders and forecasting demand. It helps to reduce mistakes and save time. The top inventory management software for ecommerce connects with popular platforms like Shopify, Amazon, and WooCommerce to provide smooth functioning for any size business.
How it Works in Modern Ecommerce
Today’s ecommerce inventory management software acts as a single platform, effortlessly sharing data across all sales channels in real time. With each order of a customer on Amazon, the stock number is immediately adjusted on Shopify, WooCommerce, and the other platforms, blocking overselling. While advanced setups deploy AI and machine learning to predict demand and maintain optimal stock levels. Barcode scanning, warehouse management, and shipping carrier integration help to optimize fulfillment, making these tools essential for best rated ecommerce inventory solutions.
Inventory Management vs Order Management
While inventory management system ecommerce is all about managing stock levels, stock locations, and reordering, order management is responsible for the entire life cycle of a customer order, from order to delivery. The ideal inventory and order management software has both, providing a complete warehouse control and fulfillment solution. For instance, shopify, amazon, woocommerce inventory software also provide order management capabilities to streamline operation across various channels.
Why Your Ecommerce Business Needs the Right Inventory Software
Choosing the best inventory management software for ecommerce is critical for staying competitive. Here’s why:
Real-Time Stock Control
Real-time stock handling features are another feature of our real-time ecommerce inventory analytics, this help in the auto sync of stock data across all the channels. This eliminates overbooking, minimizes stockouts, and improves customer satisfaction. Software such as Zoho Inventory and Cin7 have real-time updates, and are two of the best ecommerce inventory tools 2025.
Multichannel Selling Synchronization
For e-commerce businesses selling on Shopify, Amazon, and WooCommerce, an inventory tool with multi-channel support synchronizes inventory levels across sales channels. This removes differences and hand updating, saving time and preventing errors. Veeqo and Sellbrite are solutions that do this exceptionally well, so they’re among the best backend inventory management software for ecommerce.
Reducing Overstock and Stockouts
Overstock is expensive and stockouts result in lost sales. The best ecommerce inventory management software leverages predictive analysis to strike an ideal inventory balance that guarantees you have the stock you need at the time you need it. Inventory systems that have the demand forecasting in them, like Netstock allow businesses to optimize stock levels.
Scaling with Automation (AI/ML)
Automation, driven by A.I. and machine learning, simplifies routine work like reordering and forecasting. This expandability is very important for growing companies. AI-based tools such as Skubana and Orderhive are making the as the top-rated ecommerce inventory management solutions among scaling brands.
Key Features to Look For in Ecommerce Inventory Software
When selecting inventory management software for ecommerce, prioritize these features:
Real-Time Inventory Tracking
Real time tracking ensures stock levels across all channels are updated in real time, in order to avoid over selling. This is an core features of best ecommerce inventory software 2025, such as Zoho Inventory and Fishbowl.
Multichannel Order Fulfillment
A multi channel supportive inventory tool helps in the fulfillment of orders from different channels such as Shopify, Amazon, eBay. Cin7 and Veeqo are great at multichannel order fulfillment and making your operations faster and more efficient.
Supplier and Purchase Order Management
Automated PO System Eases Vendor Communication and Re-Ordering . Tools likes Netstock and QuickBooks Commerce provide powerful options when considering best software for inventory and orders.
Barcode and Warehouse Integration
The high-speed barcode scanning and warehouse integration, bringing in efficiency in large operation. Fishbowl and ShipBob are great ecommerce inventory systems for warehouse management.
Returns Handling & Demand Forecasting
Efficient returns handling and a well-maintained stock inventory system supported by demand prediction saves cost and ensure stock replenishment. Both Netstock and Katana offer more advanced forecasting, so they’re some of the top rated ecommerce inventory solutions.
Integration with Shipping and Accounting Tools
Seamless integration with shipping ostatnim shipping and accounting platforms like QuickBooks, Xero, and ShipStation is essential. QuickBooks Commerce and Zoho Inventory are leaders in inventory software for Shopify, Amazon, WooCommerce.
“Looking for more insights? Check out our detailed guide on “10 Key Features of Inventory Management Software.”
Best Ecommerce Inventory Management Software in 2025 (Compared)
Here’s a detailed look at the best 15 ecommerce inventory management software tools in 2025, tailored to various business needs.
1. Zoho Inventory – Best for MSMEs and SMEs
Zoho Inventory is all-in-one solution inventory management software that enables businesses to manage their inventory, sales and purchases from a single system.
Features, Pros, Cons, Pricing
- Features: Real-time stock tracking, multichannel integration (Shopify, Amazon, eBay), automated workflows, order management, and composite item support.
- Pros: Affordable, user-friendly, free plan for small businesses, robust accounting integration with Zoho Books.
- Cons: Limited integrations compared to enterprise solutions, may lack advanced manufacturing features.
- Pricing: Free plan (50 orders/month), paid plans from $29/month (annual billing).
2. Cin7 – Best for Multichannel and Omnichannel Selling
Cin7 is a robust inventory management software built for the unique needs of eCommerce businesses. The main purpose for this software is to offer a clear picture about the available stocks and the stock transactions, which can be held either in the warehouses or in the sales locations.
Features, Pros, Cons, Pricing
- Features: Over 700 integrations (Shopify, Amazon, QuickBooks), ForesightAI for demand forecasting, multichannel order management, B2B portals.
- Pros: Robust multichannel sync, scalable for growing businesses, advanced reporting.
- Cons: Higher pricing, reported customer support issues.
- Pricing: Starts at $349/month.
3. Netstock – Best for Demand Planning & Forecasting
Netstock offers advanced visibility of multiple sales channels and warehouses – Businesses can use this data to monitor their stock levels, and plan for future orders. It is geared toward eCommerce companies, offering automatic order fulfillment, integrated shipping solutions and return tracking.
Features, Pros, Cons, Pricing
- Features: AI-powered demand forecasting, supply planning, real-time analytics, integration with ERP systems.
- Pros: Exceptional forecasting, reduces overstock, ideal for complex supply chains.
- Cons: Limited focus on small businesses, complex setup.
- Pricing: Custom pricing, contact for quote.
4. Fishbowl – Best for Manufacturing & Warehousing
The Fishbowl eCommerce inventory management system provides superior automation tools and real-time data features that will help any business effortlessly manage inventory. It comes with a simple UI and it is easy even for the beginners.
Features, Pros, Cons, Pricing
- Features: Warehouse management, barcode scanning, QuickBooks integration, manufacturing tools.
- Pros: Strong for warehousing, customizable, affordable for mid-sized businesses.
- Cons: Steep learning curve, limited ecommerce integrations.
- Pricing: Starts at $329/month.
5. inFlow Inventory – Best for B2B Sales & Wholesalers
InFlow is a cloud-based product that enables automatic ordering, tracking, and management of inventory. One of the main attributes of InFlow is the ability to provide reports on demand according to user interests. This gives businesses a clearer view of their stock levels, giving them the ability to make better decisions when it comes to ordering and stocking up.
Features, Pros, Cons, Pricing
- Features: B2B portals, barcode support, order management, Shopify/WooCommerce integration.
- Pros: User-friendly, supports 120+ currencies, great for wholesalers.
- Cons: Scalability issues for large enterprises, limited customization.
- Pricing: Starts at $110/month.
6. Katana – Best for Small Manufacturers
Katana is a cloud-based manufacturing ERP and inventory management software designed for small manufacturers in the electronics, food and beverage, and cosmetics industries. You’ll get real-time inventory tracking, production scheduling, order management, and easy access and connectivity with platforms such as Shopify, QuickBooks, and Xero.
Features, Pros, Cons, Pricing
- Features: Production planning, real-time tracking, Shopify/WooCommerce integration, shop floor app.
- Pros: Ideal for manufacturing, intuitive interface, affordable for small businesses.
- Cons: Limited for non-manufacturing businesses, basic reporting.
- Pricing: Starts at $179/month.
7. Veeqo – Best Free Tool for Shopify & Amazon Sellers
Veeqo is a cloud-based inventory management & shipping software for online retailers, acquired by Amazon in 2021. It simplifies inventory tracking, order fulfillment, and shipping for all your sales channels from one central dashboard — handle everything from Amazon and eBay to Shopify and Walmart.
Features, Pros, Cons, Pricing
- Features: Free multichannel sync (Shopify, Amazon, eBay), shipping integrations, barcode scanning.
- Pros: Free plan, user-friendly, great for small businesses.
- Cons: Limited features in free plan, requires 50% shipping via partners.
- Pricing: Free, Pro plan at $250/month.
8. Unicommerce – Best SaaS Solution for Enterprise-Level Sellers
Unicommerce (Inventory and Order Management software for e-commerce companies). It is a market leader in e-commerce focused inventory and order management software with customers in India, South Asia, South Africa, the Middle East and Southeast Asia. It focuses on SMEs looking to simplify multi-channel sales, warehouse management and supply chain operations, from their stores on Amazon, Flipkart, Shopify, Myntra etc.
Features, Pros, Cons, Pricing
- Features: Multichannel sync, automated order processing, warehouse management, ERP integration.
- Pros: Scalable, robust SaaS platform, excellent for large enterprises.
- Cons: Complex setup, higher cost for small businesses.
- Pricing: Custom pricing, contact for quote.
9. QuickBooks Commerce – Best for Accounting Integration
QuickBooks Commerce (formerly TradeGecko) is a powerful cloud-based inventory and order management software for modern online businesses. It also syncs with QuickBooks Online and has tools for multi-channel sales, inventory, and accounting. But now in June 2022 it is no longer available for purchase as a stand-alone product, you have to bundle it with QuickBooks Online for U.S. users.
Features, Pros, Cons, Pricing
- Features: Real-time stock updates, multichannel sync, QuickBooks integration, B2B portals.
- Pros: Seamless accounting sync, affordable for small businesses.
- Cons: Limited advanced features, fewer integrations.
- Pricing: Starts at $39/month.
10. Skubana – Best for Scaling DTC Brands
Skubana, now rebranded as Extensiv Order Management after acquisition by Extensiv ( previously 3PL Central ), is a cloud-based inventory and order management software solution targeting e-commerce retailers, specialized towards multi-channel sellers. It consolidates back-end functions such as inventory management, order processing and shipping, and analytics, and emphasizes automation and scalability.
Features, Pros, Cons, Pricing
- Features: AI-driven automation, multichannel sync, advanced analytics, order management.
- Pros: Ideal for DTC growth, robust automation, scalable.
- Cons: Expensive, complex for small businesses.
- Pricing: Custom pricing, contact for quote.
11. Orderhive – Best for Automation & Customization
Cin7 Orderhive Formerly known as Orderhive was acquired by Cin7, in February 2021- offers a 2-way transfer for orders, products and customers between our marketplace and your own system in an easy to manage simple way. Here’s an overview and comparison of Skubana (Extensiv Order Management), QuickBooks Commerce, Unicommerce, Katana, Veeqo – specifically in response to your interest in inventory software.
Features, Pros, Cons, Pricing
- Features: Automated workflows, customizable dashboards, Shopify/Amazon integration, reporting.
- Pros: Highly customizable, automation-focused, scalable.
- Cons: Steep learning curve, occasional bugs.
- Pricing: Starts at $99/month.
12. ShipBob – Best for Fulfillment + Inventory
ShipBob is an worldwide e-commerce fulfillment and inventory management software, mostly a third-party logistics (3PL) service that has been specifically created for anything from small and medium-sized companies (SMBs) that operate online mostly in retail, health, and wellness, and consumer goods. It offers a mix of warehousing, order fulfillment, and proprietary inventory management software to simplify logistics.
Features, Pros, Cons, Pricing
- Features: Fulfillment services, inventory tracking, Shopify/Amazon integration, returns management.
- Pros: Combines fulfillment and inventory, great for D2C brands.
- Cons: Fulfillment-focused, less robust for non-fulfillment needs.
- Pricing: Custom pricing based on fulfillment needs.
13. Sellbrite – Best for Marketplace Integrations
Sellbrite (now owned by GoDaddy after an acquisition in 2019) is a cloud-based inventory and order management software built for small to midsize online retailers who sell through multiple channels such as Amazon, eBay, Etsy, Shopify, Walmart and BigCommerce. It concentrates on making the multi-channel selling easy through managing stock, orders, and listing from many channels.
Features, Pros, Cons, Pricing
- Features: Marketplace sync (Amazon, eBay, Walmart), listing management, order fulfillment.
- Pros: Easy marketplace integration, user-friendly, affordable.
- Cons: Limited advanced features, basic reporting.
- Pricing: Starts at $29/month.
14. Brightpearl – Best for Mid-Sized Retailers
Brightpearl (now Brightpearl by Sage, 2022), is a cloud-based Retail Operating System (ROS) for mid-sized to large retailers and wholesalers focused on helping merchants to achieve omnichannel success with Brightpearl’s built-in and product advanced management various inventory & retail sales and operations management capabilities. It offers inventory management, order processing, accounting, CRM, as well as warehouse management with an emphasis on automation and real-time access to information.
Features, Pros, Cons, Pricing
- Features: Multichannel sync, advanced automation, Shopify/Amazon integration, retail analytics.
- Pros: Robust for mid-sized retailers, strong reporting.
- Cons: Expensive, complex setup.
- Pricing: Custom pricing, contact for quote.
15. Shopify – Best Built-in Tool for Shopify Users
Shopify is an advanced e-commerce service that offers a suite of tools to its users for creating and operating online stores such as inventory management, order processing, and multi-channel selling. Even though it’s famous as a website building platform, Shopify has built-in inventory management and is compatible with third-party apps that that allow retailers, both big and small, to improve on its functionality.
Features, Pros, Cons, Pricing
- Features: Built-in inventory tracking, Shopify POS, multichannel sync, basic reporting.
- Pros: Seamless for Shopify users, no additional cost, easy to use.
- Cons: Limited for non-Shopify users, basic features.
- Pricing: Included in Shopify plans ($39-$399/month).
“Find out how inventory management apps can save you time and money in our latest article.”
Software by Business Type: What’s Best for You?
Choosing the best inventory software for ecommerce depends on your business type and needs.
For Dropshipping Businesses
Dropshipping needs simple, lightweight and inexpensive apps with good marketplace support. For small business owners looking for an affordable inventory management to manage inventory. Veeqo (free plan) and Sellbrite integrate with Amazon, eBay, and Shopify without any interruption.
For Small Ecommerce Stores
Smaller retailers require more affordable equipment with fewer features. With free and low-cost inventory management for small businesses, Zoho Inventory (free plan) and QuickBooks Commerce can integrates with Shopify and WooCommerce.
For Large-Scale Retailers
Big Retailers want scalable enterprise solutions. Unicommerce and Cin7 offer effectively the ideal functionality of e-commerce inventory solutions, with capabilities such as multichannel sync and advanced analytics.
For B2B and Wholesale Sellers
B2B businesses require B2B portals and bulk order management. inFlow Inventory and Brightpearl excel in inventory software for Shopify, Amazon, WooCommerce with B2B capabilities.
For D2C Brands and Multichannel Sellers
D2C brands need automation and scalability. Skubana and Orderhive are top choices for inventory tool with multi-channel support, offering AI-driven growth tools.
“Compare features and pricing in our roundup of the [best inventory management softwares in 2025].”
How to Choose the Right Inventory Management Software
Selecting the best inventory management software for ecommerce requires careful consideration:
Must-Ask Questions Before Purchasing
- Does it integrate with your existing platforms (Shopify, Amazon, QuickBooks)?
- Can it scale with your business growth?
- Are there hidden fees or setup costs?
- Does it offer real-time ecommerce inventory analytics?
Free Trials vs Paid Tools
Free trials such as Katana and Veeqo allow you to test features, but with paid tools such as Cin7 and Skubana you’ll gain access to more advanced features. Compare ecommerce inventory software with trials to check usability.
Cloud-Based vs On-Premise Systems
Cloud-based platforms (Zoho, Veeqo) offer flexibility and are cost-efficient, with on-premise ones (Fishbowl) catering to businesses with more intricate warehousing requirements. The majority of the best ecommerce inventory software 2025 are based on the cloud to be accessed from anywhere.
Integration with Existing Ecommerce Platforms
Make sure it as easily integrated with Shopify, Amazon, WooCommerce and accounting software. Some inventory software for Shopify, Amazon, WooCommerce like QuickBooks Commerce and Sellbrite automate workflows.
Pricing Breakdown: What Should You Expect to Pay?
Understanding ecommerce inventory software pricing is key to budgeting.
Free vs Paid Tools
Free solutions such as Veeqo and Zoho Inventory (limited plans) are designed for small businesses, while paid solutions such as Cin7 ($349 per month) include more advanced capabilities for scaling.
Monthly vs Annual Plans
You frequently get 10-20% off with annual plans (Zoho Inventory, Katana, for instance). Monthly plans offer flexibility but could be more expensive in the long run.
Hidden Fees to Watch For
Beware of setup fees, API access fees, or additional user/order fees. Pros and cons of inventory tools often highlight hidden costs in solutions like Unicommerce and Netstock.
Comparison Table: Features & Pricing at a Glance
| Software | Best For | Key Features | Pricing | Free Plan/Trial |
|---|---|---|---|---|
| Zoho Inventory | MSMEs, SMEs | Real-time tracking, Shopify integration | $29-$299/month | Yes |
| Cin7 | Multichannel Selling | 700+ integrations, ForesightAI | $349/month+ | Yes |
| Netstock | Demand Forecasting | AI forecasting, ERP integration | Custom | No |
| Fishbowl | Manufacturing, Warehousing | Barcode scanning, QuickBooks integration | $329/month+ | Yes |
| inFlow Inventory | B2B, Wholesalers | B2B portals, 120+ currencies | $110-$1319/month | Yes |
| Katana | Small Manufacturers | Production planning, shop floor app | $179-$359/month | Yes |
| Veeqo | Shopify/Amazon Sellers | Free multichannel sync, shipping | Free, $250/month | Yes |
| Unicommerce | Enterprise Sellers | SaaS, warehouse management | Custom | No |
| QuickBooks Commerce | Accounting Integration | Real-time sync, B2B portals | $39/month+ | Yes |
| Skubana | DTC Brands | AI automation, analytics | Custom | No |
| Orderhive | Automation, Customization | Custom dashboards, automation | $99/month+ | Yes |
| ShipBob | Fulfillment + Inventory | Fulfillment, Shopify integration | Custom | No |
| Sellbrite | Marketplace Integrations | Amazon/eBay sync, listing management | $29/month+ | Yes |
| Brightpearl | Mid-Sized Retailers | Advanced automation, retail analytics | Custom | No |
| Shopify | Shopify Users | Built-in tracking, POS | $39-$399/month | No |
Final Verdict: Which Tool Is Right for Your Ecommerce Growth?
The best inventory software for ecommerce depends on your business size and goals. For a small business, Zoho Inventory and Veeqo are some of the best cheap inventory management providers for small business with extensive features. Cin7 or Skubana are good inventory tools with multichannel for growing retailers. Manufacturers take advantage of Katana or Fishbowl while bigger enterprises trust Unicommerce or Netstock for more sophisticated inventory systems with demand forecasting. Compare your best ecommerce inventory software in 2025 Side by Side, including integrations, pricing and features.